Package index

Core Workflow Functions

The main functions for the 3-step analysis.

find_cutpoint_number() print(<find_cutpoint_number_result>) summary(<find_cutpoint_number_result>) plot(<find_cutpoint_number_result>)

Find Optimal Number of Cut-points for Survival Data

find_cutpoint() print(<find_cutpoint>) summary(<find_cutpoint>) plot(<find_cutpoint>)

Find Optimal Cut-points for Survival Data

validate_cutpoint() print(<validate_cutpoint_result>) plot(<validate_cutpoint_result>) summary(<validate_cutpoint_result>)

Validate an Optimal Cut-point Using Bootstrapping

Plotting Functions

Functions and methods for visualizing results.

find_cutpoint() print(<find_cutpoint>) summary(<find_cutpoint>) plot(<find_cutpoint>)

Find Optimal Cut-points for Survival Data

find_cutpoint_number() print(<find_cutpoint_number_result>) summary(<find_cutpoint_number_result>) plot(<find_cutpoint_number_result>)

Find Optimal Number of Cut-points for Survival Data

plot_diagnostics()

Diagnostic Plot of Schoenfeld Residuals

plot_optimization_curve()

Plot Optimisation Curve from a Systematic Search

validate_cutpoint() print(<validate_cutpoint_result>) plot(<validate_cutpoint_result>) summary(<validate_cutpoint_result>)

Validate an Optimal Cut-point Using Bootstrapping

Datasets

Example datasets included with the package.

crc_virome

Colon and Rectal Cancer Clinical and Virome Data

germination

Simulated Rapeseed Germination and Growth Data

Utilities

`%||%`

Infix operator for NULL default