Package index

Core Workflow Functions

The main functions for the 3-step analysis.

find_cutpoint_number() print(<find_cutpoint_number_result>) summary(<find_cutpoint_number_result>) plot(<find_cutpoint_number_result>)

Find Optimal Number of Cut-points for Survival Data

find_cutpoint() print(<find_cutpoint>) summary(<find_cutpoint>) plot(<find_cutpoint>)

Find Optimal Cut-points for Survival Data

validate_cutpoint() print(<validate_cutpoint_result>) plot(<validate_cutpoint_result>) summary(<validate_cutpoint_result>)

Validate an Optimal Cut-point Using Bootstrapping

Plotting & Diagnostics

Functions for visualising results and checking model assumptions.

plot_optimisation_curve()

Plot Optimisation Curve from a Systematic Search

plot_cutpoint_residuals()

Diagnostic Plot of Schoenfeld Residuals

find_cutpoint() print(<find_cutpoint>) summary(<find_cutpoint>) plot(<find_cutpoint>)

Find Optimal Cut-points for Survival Data

find_cutpoint_number() print(<find_cutpoint_number_result>) summary(<find_cutpoint_number_result>) plot(<find_cutpoint_number_result>)

Find Optimal Number of Cut-points for Survival Data

validate_cutpoint() print(<validate_cutpoint_result>) plot(<validate_cutpoint_result>) summary(<validate_cutpoint_result>)

Validate an Optimal Cut-point Using Bootstrapping

Inspecting & Reporting Results

Methods for summarising analysis objects and extracting results.

find_cutpoint() print(<find_cutpoint>) summary(<find_cutpoint>) plot(<find_cutpoint>)

Find Optimal Cut-points for Survival Data

find_cutpoint_number() print(<find_cutpoint_number_result>) summary(<find_cutpoint_number_result>) plot(<find_cutpoint_number_result>)

Find Optimal Number of Cut-points for Survival Data

validate_cutpoint() print(<validate_cutpoint_result>) plot(<validate_cutpoint_result>) summary(<validate_cutpoint_result>)

Validate an Optimal Cut-point Using Bootstrapping

Datasets

Example datasets included with the package.

crc_virome

Colon and Rectal Cancer Clinical and Virome Data

germination

Simulated Rapeseed Germination and Growth Data